CONP Portal | Dataset


POND Registry Imaging Data Release
Creators: Ontario Brain Institute
Contact: Brain-CODE, datarelease@braincode.ca
Licenses: Refer to Brain-CODE Governance Policy
Version: 1.0
Formats: CSV
Size: 33.0 GB
No of Files: 288
No of Subjects: 682
Metadata file: DATS.json
Is About: Homo sapiens
Acknowledges: Ontario Brain Institute, Autism Speaks, Autism Ontario, Circle 21, Community Living Toronto, Ontario Rett Syndrome Association, Totally ADD, Sick Kids Down Syndrome Clinic, Province of Ontario Neurodevelopmental Disorders Network, Government of Ontario
Spatial Coverage: Canada
Other Dates: Start Date: 2012-02-02 00:00:00 -- End Date: 2019-11-01 00:00:00
Description:
The Province of Ontario Neurodevelopmental Disorders (POND) Network is an Integrated Discovery Program funded by the Ontario Brain Institute and aims to understand the neurobiology of neurodevelopment disorders and translate the findings into effective new treatments. This controlled data release includes T1 weighted and T2 weighted structural MRIs, DTI, MRS, resting and task based fMRI, and MEG imaging data along with demographic, medical history data, behavioural and cognitive assessments for 682 children and youth diagnosed with various neurodevelopmental disorders as well as typically developing children and youth.

Dataset README information

README.md

Province of Ontario Neurodevelopmental Disorders Network (POND) Imaging Data Release

Dr. Evdokia Anagnostou, Dr. Jason Lerch, Dr. Paul D. Arnold, Dr. Rob Nicolson, Dr. Stelios Georgiades, Dr. Stephen W. Scherer, Dr. Russell Schachar, Dr. Jennifer Crosbie, Dr. Peter Szatmari, Dr. Xudong Liu, Dr. Elizabeth Kelley, Dr. Muhammad Ayub and Dr. Karun Singh. POND Network

Overview

The Province of Ontario Neurodevelopmental Disorders (POND) Network is an Integrated Discovery Program funded by the Ontario Brain Institute and aims to understand the neurobiology of neurodevelopment disorders and translate the findings into effective new treatments. This controlled data release includes T1 weighted and T2 weighted structural MRIs, DTI, MRS, resting and task based fMRI, and MEG imaging data along with demographic, medical history data, behavioural and cognitive assessments for 682 children and youth diagnosed with various neurodevelopmental disorders as well as typically developing children and youth.

Data organization

Data is organized into packages by Imaging Scan Type, Primary Diagnosis, and Clinical Data Collection Domain.

Access information

To gain access to Brain-CODE Controlled Data Release data, Study Investigators will submit requests via Data Release Portals at www.braincode.ca. These requests will be reviewed by the Brain-CODE Data Access Committee and the Brain-CODE Steering Committee. Learn more about these Committees in the Brain-CODE Governance Policy (https://braininstitute.ca/docs/Brain-CODE-Governance-Policy-version-FINAL.pdf).

Visit outhe Brain-CODE Knowledge Base to learn more about our data releases.

Download Using DataLad

CircleCI status

The following instructions require a basic understanding of UNIX/LINUX command lines. Future portal functionality may include downloads directly from the web browser. Dataset download is currently enabled through DataLad.

Note: The conp-dataset requires version >=0.12.5 of DataLad and version >=8.20200309 of git-annex.

To install DataLad on your system, please refer to the install section of the DataLad Handbook (installation via miniconda is recommended in order to obtain the latest version of DataLad).

1) Initiate the CONP dataset

To initiate the CONP dataset (conp-dataset), run the following command in the directory where you want CONP datasets to be installed:

datalad install https://github.com/CONP-PCNO/conp-dataset.git

2) Install the braincode_POND_Registry_Imaging_Data_Release dataset

To install the dataset, go into the created conp-dataset directory and run datalad install on the dataset braincode_POND_Registry_Imaging_Data_Release:

cd conp-dataset
datalad install projects/braincode_POND_Registry_Imaging_Data_Release

3) Download the braincode_POND_Registry_Imaging_Data_Release dataset

Now that the DataLad dataset has been installed, go into the dataset directory under projects/braincode_POND_Registry_Imaging_Data_Release.

cd projects/braincode_POND_Registry_Imaging_Data_Release

Note that files visible in the dataset are symlinks and will need to be downloaded manually using the datalad get command in the dataset directory:

datalad get <filepath>

Note, if you run datalad get * command, all the files present in the dataset directory will be downloaded.

For more information on how DataLad works, please visit the DataLad Handbook documentation .