CONP Portal | Dataset


OpenPain placebo_predict_tetreault
Creators: OpenPain
Contact: A. Vania Apkarian, Director Center for Translational Pain Research, Northwestern University, Feinberg School of Medicine, a-apkarian@northwestern.edu
Licenses: http://openpain.org/generalLicense.html
Version: 1.0
Modalities: MRI fMRI
Formats: NIfTI
Size: 5.1 GB
No of Files: 492
No of Subjects: 76
Metadata file: DATS.json
Is About: Homo sapiens, adult
Description:
In this dataset you will find the following T1 and resting state scans for: * 20 Healthy controls. * 17 Osteoarthritis (OA) patients from a 2-week placebo only treatment (study 1) scanned before treatment. * 39 OA patients from a 3-month placebo vs duloxetine treatment (study 2) scanned before treatment. Demographics with age, gender, stratification, etc. can be found in the participants.tsv file. This data has been released to the public domain under the open data commons license, a copy of which is included. An additional copy has also been submitted to http://openfmri.org

Dataset README information

README.md

In this dataset you will find the following T1 and resting state scans for:

  • 20 Healthy controls.
  • 17 Osteoarthritis (OA) patients from a 2-week placebo only treatment (study 1) scanned before treatment.
  • 39 OA patients from a 3-month placebo vs duloxetine treatment (study 2) scanned before treatment.

Demographics with age, gender, stratification, etc. can be found in the participants.tsv file.

This data has been released to the public domain under the open data commons license, a copy of which is
included. An additional copy has also been submitted to http://openfmri.org

Download Using DataLad

CircleCI status

The following instructions require a basic understanding of UNIX/LINUX command lines. Future portal functionality may include downloads directly from the web browser. Dataset download is currently enabled through DataLad.

Note: The conp-dataset requires version >=0.12.5 of DataLad and version >=8.20200309 of git-annex.

To install DataLad on your system, please refer to the install section of the DataLad Handbook (installation via miniconda is recommended in order to obtain the latest version of DataLad).

1) Initiate the CONP dataset

To initiate the CONP dataset (conp-dataset), run the following command in the directory where you want CONP datasets to be installed:

datalad install https://github.com/CONP-PCNO/conp-dataset.git

2) Install the openpain/placebo_predict_tetreault dataset

To install the dataset, go into the created conp-dataset directory and run datalad install on the dataset openpain/placebo_predict_tetreault:

cd conp-dataset
datalad install projects/openpain/placebo_predict_tetreault

3) Download the openpain/placebo_predict_tetreault dataset

Now that the DataLad dataset has been installed, go into the dataset directory under projects/openpain/placebo_predict_tetreault.

cd projects/openpain/placebo_predict_tetreault

Note that files visible in the dataset are symlinks and will need to be downloaded manually using the datalad get command in the dataset directory:

datalad get <filepath>

Note, if you run datalad get * command, all the files present in the dataset directory will be downloaded.

For more information on how DataLad works, please visit the DataLad Handbook documentation .