CONP Portal | Tools & Pipelines Search


Results 1 - 20 displayed of 144. (Maximum results per page)
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Brainstorm
  • Tags: brainstormeegeegnet
  • Publication Date: 2024-11-11
  • Description: Enables to perform the pre-processing steps on EEG data.
ARK ID : https://n2t.net/ark:/70798/p7v1wxk4p19bj0fhgs
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pyLossless
  • Tags: neuroinformaticseegeegnet
  • Publication Date: 2024-10-29
  • Description: Run the pyLossless pipeline on a BIDS subject file.
ARK ID : https://n2t.net/ark:/70798/p7x4gsn08349n8h38m
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CQUESTwithBruker-preproc
  • Tags:
  • Publication Date: 2024-07-18
  • Description: Proprocessing pipeline for spectroscopy signals acquired on a Brucker MRI followed by cQuest MR spectrosocpy signal quantification software.<br />
ARK ID : https://n2t.net/ark:/70798/p7c6f6sr97ngh0h92m
dataset format
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FLIRT 6.0.4 fuzzy
  • Tags: neuroinformaticsfmri
  • Publication Date: 2023-12-08
  • Description: A fuzzy (https://github.com/verificarlo/fuzzy) version of FSL FLIRT, as implemented in Nipype (module: nipype.interfaces.fsl, interface: FLIRT).
ARK ID : https://n2t.net/ark:/70798/p7ph6c7mf2kc12xf9k
dataset format
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Trainer
  • Tags:
  • Publication Date: 2023-12-08
  • Description: Tool for training machine learning models.
ARK ID : https://n2t.net/ark:/70798/p7kh330hg26v461jng
dataset format
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FLIRT 6.0.4
  • Tags: neuroinformaticsfmri
  • Publication Date: 2023-12-08
  • Description: FSL FLIRT, as implemented in Nipype (module: nipype.interfaces.fsl, interface: FLIRT).
ARK ID : https://n2t.net/ark:/70798/p74c6c66n51v499x4g
dataset format
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fsl_first_6.0.4
  • Tags: neuroinformaticsmri
  • Publication Date: 2023-12-08
  • Description: FIRST is a model-based segmentation and registration tool, based on a Bayesian model of shape and appearance for subcortical structures.
ARK ID : https://n2t.net/ark:/70798/p7fjd00hp67k208m5q
dataset format
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Image processing
  • Tags:
  • Publication Date: 2023-12-08
  • Description: Tool for image processing workflows.
ARK ID : https://n2t.net/ark:/70798/p7g3tzhbf0xxs67hdf
dataset format
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Freesurfer mris_compute_lgi
  • Tags:
  • Publication Date: 2023-09-20
  • Description: Performs mris_compute_lgi.
ARK ID : https://n2t.net/ark:/70798/p7h70gvfq5mcv6brvz
dataset format
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FreeSurfer-Recon-all local Gyrification Index (lGI)
  • Tags:
  • Publication Date: 2023-09-16
  • Description: Performs all, or any part of, the FreeSurfer cortical reconstruction process (https://surfer.nmr.mgh.harvard.edu/fswiki/recon-all) + LGI (https://surfer.nmr.mgh.harvard.edu/fswiki/LGI)
ARK ID : https://n2t.net/ark:/70798/p7m8p9g9q483b8s5x5
dataset format
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FreeSurfer-7_1_1-Brainstem-Structures
  • Tags:
  • Publication Date: 2023-06-18
  • Description: Generates automated segmentation of four brainstem structures from T1 scan - for v7. https://surfer.nmr.mgh.harvard.edu/fswiki/BrainstemSubstructures
ARK ID : https://n2t.net/ark:/70798/p7m67kpsc5s0r4x0c4
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FreeSurfer-Stats2table
  • Tags:
  • Publication Date: 2023-06-13
  • Description: Converts a stats file created by recon-all into a table in which each line is a subject and each column is a parcellation (command: aparcstats2table) or segmentation (command: asegstats2table): https://surfer.nmr.mgh.harvard.edu/fswiki/aparcstats2table, https://surfer.nmr.mgh.harvard.edu/fswiki/asegstats2table.
ARK ID : https://n2t.net/ark:/70798/p7dwvm64n0r096rcbj
dataset format
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11
mincreshape
  • Tags: neuroimaging
  • Publication Date: 2023-05-31
  • Description: mincreshape - cuts a hyperslab out of a minc file (with dimension re-ordering)
ARK ID : https://n2t.net/ark:/70798/p7v6v1gzv3dp82djzj
dataset format
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nii2mnc
  • Tags: neuroimaing
  • Publication Date: 2023-05-26
  • Description: nii2mnc: Convert NIfTI-1 files to MINC format
ARK ID : https://n2t.net/ark:/70798/p71hs7sch1qs2738b8
dataset format
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11
FreeSurfer7-Recon-all-qcache
  • Tags:
  • Publication Date: 2023-05-10
  • Description: resample longitudinal data onto the average subject (called fsaverage) & smooth it at a range of FWHM: (https://surfer.nmr.mgh.harvard.edu/fswiki/qcache).
ARK ID : https://n2t.net/ark:/70798/p7mtrnm8x83zc48q4q
dataset format
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FreeSurfer7-long_mris_slopes
  • Tags:
  • Publication Date: 2023-05-10
  • Description: Prepare the data with long_mris_slopes for longitudinal two stage model (https://surfer.nmr.mgh.harvard.edu/fswiki/LongitudinalTwoStageModel).
ARK ID : https://n2t.net/ark:/70798/p76fq6hqd0mqc4tkfb
dataset format
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FreeSurfer7-mris_preproc
  • Tags:
  • Publication Date: 2023-05-10
  • Description: Concatenate surface-based data with mris_preproc (https://surfer.nmr.mgh.harvard.edu/fswiki/mris_preproc).
ARK ID : https://n2t.net/ark:/70798/p74nm84ng1ckr2qpdq
dataset format
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FreeSurfer7-Recon-all-long
  • Tags:
  • Publication Date: 2023-05-10
  • Description: -long longitudinally process all timepoints with recon-all -long: (https://surfer.nmr.mgh.harvard.edu/fswiki/LongitudinalProcessing).
ARK ID : https://n2t.net/ark:/70798/p76t7wp6r8qr12283f
dataset format
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FreeSurfer7-mri_glmfit-sim
  • Tags:
  • Publication Date: 2023-05-10
  • Description: Performs general linear model (GLM) analysis in the volume or the surface with correction for multiple comparisons (https://surfer.nmr.mgh.harvard.edu/fswiki/mri_glmfit).
ARK ID : https://n2t.net/ark:/70798/p7ktw0rgc9frm0ph1r
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FreeSurfer7-mri_glmfit_1con
  • Tags:
  • Publication Date: 2023-05-10
  • Description: Performs general linear model (GLM) analysis in the volume or the surface (https://surfer.nmr.mgh.harvard.edu/fswiki/mri_glmfit).
ARK ID : https://n2t.net/ark:/70798/p7pn934ds149v81v13