CONP Portal | Dataset


Comparing Perturbation Modes for Evaluating Instabilities in Neuroimaging: Processed NKI-RS Subset (08/2019)
Creators: Kiar, Gregory
Licenses: CC-BY-4.0
Version: None
Formats: H5
Size: 57.0 MB
No of Files: 1
Metadata file: DATS.json
Description:

The processed subset of the NKI-RS dataset for evaluation of various perturbation modes when studying instabilities. Linked to the pre-print found here, can be visualized using the plotting code here, and generated with various scripts and launch configurations found here.

Dataset README information

README.md

Comparing Perturbation Modes for Evaluating Instabilities in Neuroimaging: Processed NKI-RS Subset (08/2019)

DOI

Crawled from Zenodo

Description

The processed subset of the NKI-RS dataset for evaluation of various perturbation modes when studying instabilities. Linked to the pre-print found here, can be visualized using the plotting code here, and generated with various scripts and launch configurations found here.

Download Using DataLad

CircleCI status

The following instructions require a basic understanding of UNIX/LINUX command lines. Future portal functionality may include downloads directly from the web browser. Dataset download is currently enabled through DataLad.

Note: The conp-dataset requires version >=0.12.5 of DataLad and version >=8.20200309 of git-annex.

To install DataLad on your system, please refer to the install section of the DataLad Handbook (installation via miniconda is recommended in order to obtain the latest version of DataLad).

1) Initiate the CONP dataset

To initiate the CONP dataset (conp-dataset), run the following command in the directory where you want CONP datasets to be installed:

datalad install https://github.com/CONP-PCNO/conp-dataset.git

2) Install the Comparing_Perturbation_Modes_for_Evaluating_Instabilities_in_Neuroimaging__Processed_NKI_RS_Subset__08_2019_ dataset

To install the dataset, go into the created conp-dataset directory and run datalad install on the dataset Comparing_Perturbation_Modes_for_Evaluating_Instabilities_in_Neuroimaging__Processed_NKI_RS_Subset__08_2019_:

cd conp-dataset
datalad install projects/Comparing_Perturbation_Modes_for_Evaluating_Instabilities_in_Neuroimaging__Processed_NKI_RS_Subset__08_2019_

3) Download the Comparing_Perturbation_Modes_for_Evaluating_Instabilities_in_Neuroimaging__Processed_NKI_RS_Subset__08_2019_ dataset

Now that the DataLad dataset has been installed, go into the dataset directory under projects/Comparing_Perturbation_Modes_for_Evaluating_Instabilities_in_Neuroimaging__Processed_NKI_RS_Subset__08_2019_.

cd projects/Comparing_Perturbation_Modes_for_Evaluating_Instabilities_in_Neuroimaging__Processed_NKI_RS_Subset__08_2019_

Note that files visible in the dataset are symlinks and will need to be downloaded manually using the datalad get command in the dataset directory:

datalad get <filepath>

Note, if you run datalad get * command, all the files present in the dataset directory will be downloaded.

For more information on how DataLad works, please visit the DataLad Handbook documentation .