CONP Portal | Dataset


MRI and unbiased averages of wild muskrats (Ondatra zibethicus) and red squirrels (Tamiasciurus hudsonicus)
Creators: Devenyi, Gabriel Allan
Licenses: CC-BY-4.0
Version: 1.0
Formats: ZIP
Size: 1.0 GB
No of Files: 70
Metadata file: DATS.json
Other Dates: Date Created: 2020-02-25 21:12:57 -- Date Modified: 2021-02-04 16:53:38
Description:

Preprocessed data from:

Amuno, S., Rudko, D.A., Gallino, D., Tuznik, M., Shekh, K., Kodzhahinchev, V., Niyogi, S., Chakravarty, M.M., Devenyi, G.A., 2020. Altered neurotransmission and neuroimaging biomarkers of chronic arsenic poisoning in wild muskrats (Ondatra zibethicus) and red squirrels (Tamiasciurus hudsonicus) breeding near the City of Yellowknife, Northwest Territories (Canada). Sci. Total Environ. 707, 135556. https://doi.org/10.1016/j.scitotenv.2019.135556

 

As well as averages and brain masks generated during DBM processing. Files in both MINC2 and NIFTI format.

Dataset README information

README.md

MRI and unbiased averages of wild muskrats (Ondatra zibethicus) and red squirrels (Tamiasciurus hudsonicus)

DOI

Crawled from Zenodo

Description

Preprocessed data from:

Amuno, S., Rudko, D.A., Gallino, D., Tuznik, M., Shekh, K., Kodzhahinchev, V., Niyogi, S., Chakravarty, M.M., Devenyi, G.A., 2020. Altered neurotransmission and neuroimaging biomarkers of chronic arsenic poisoning in wild muskrats (Ondatra zibethicus) and red squirrels (Tamiasciurus hudsonicus) breeding near the City of Yellowknife, Northwest Territories (Canada). Sci. Total Environ. 707, 135556. https://doi.org/10.1016/j.scitotenv.2019.135556

 

As well as averages and brain masks generated during DBM processing. Files in both MINC2 and NIFTI format.

Download Using DataLad

CircleCI status

The following instructions require a basic understanding of UNIX/LINUX command lines. Future portal functionality may include downloads directly from the web browser. Dataset download is currently enabled through DataLad.

Note: The conp-dataset requires version >=0.12.5 of DataLad and version >=8.20200309 of git-annex.

To install DataLad on your system, please refer to the install section of the DataLad Handbook (installation via miniconda is recommended in order to obtain the latest version of DataLad).

1) Initiate the CONP dataset

To initiate the CONP dataset (conp-dataset), run the following command in the directory where you want CONP datasets to be installed:

datalad install https://github.com/CONP-PCNO/conp-dataset.git

2) Install the MRI_and_unbiased_averages_of_wild_muskrats__Ondatra_zibethicus__and_red_squirrels__Tamiasciurus_hudsonicus_ dataset

To install the dataset, go into the created conp-dataset directory and run datalad install on the dataset MRI_and_unbiased_averages_of_wild_muskrats__Ondatra_zibethicus__and_red_squirrels__Tamiasciurus_hudsonicus_:

cd conp-dataset
datalad install projects/MRI_and_unbiased_averages_of_wild_muskrats__Ondatra_zibethicus__and_red_squirrels__Tamiasciurus_hudsonicus_

3) Download the MRI_and_unbiased_averages_of_wild_muskrats__Ondatra_zibethicus__and_red_squirrels__Tamiasciurus_hudsonicus_ dataset

Now that the DataLad dataset has been installed, go into the dataset directory under projects/MRI_and_unbiased_averages_of_wild_muskrats__Ondatra_zibethicus__and_red_squirrels__Tamiasciurus_hudsonicus_.

cd projects/MRI_and_unbiased_averages_of_wild_muskrats__Ondatra_zibethicus__and_red_squirrels__Tamiasciurus_hudsonicus_

Note that files visible in the dataset are symlinks and will need to be downloaded manually using the datalad get command in the dataset directory:

datalad get <filepath>

Note, if you run datalad get * command, all the files present in the dataset directory will be downloaded.

For more information on how DataLad works, please visit the DataLad Handbook documentation .